If you google clue scroll guides you will find a ton of guides that instruct you step by step on how to complete clue scrolls. You could also try searching clue scroll puzzle box to see what you find.
Finish the top row, then move to the next row. On the last two rows, get the bottom-left four squares right, and shuffle the right three until it's right.
It takes some patience and a while to learn the trick, but after a couple of puzzle boxes you should have an easy time with them.